Image analysis workstations

Workstation policy

  • Food is also not allowed at the workstations: leave a clean and tidy work space, and log off!
  • Analysis workstation can only be used for image and data analysis
  • Image analysis computers usage need to follow our booking policy and cancellation policy
  • Please take note of our data storage policy
  • Speed-test of any analysis workstation (or microscope) can be done using the speed-docker
  • Usage of Imaris (floating) licenses can be done with Imaris license checker

Logging off

Please do not forget to log out (use: start -> sign out), since we have usage trackers installed on all our analysis workstations!!

Image analysis Workstations overview

Workstation specification overview

 WS01WS02WS03WS04WS05WS06WS07WS08WS09WS10WS11WS-R1
I01.O3.052bI01.O3.052bI01.O3.052bI01.O3.052bI01.O3.052bI01.O3.052bI01.O3.052aI01.O3.052aI01.O3.052aI01.O3.052aI01.O3.052aremote
Processor Intel® Xeon® W “Skylake” W-2145, 3.60 GHz Intel® Xeon® W “Skylake” W-2145, 3.60 GHz Intel® Xeon® W “Skylake” W-2145, 3.60 GHz Intel Xeon E5-1680 v4, 3.40 GHzIntel Xeon E5-1680 v4, 3.40 GHzIntel Xeon E5-1680 v4, 3.40 GHz Intel® Xeon® W “Skylake” W-2145, 3.60 GHz Intel® Xeon® W “Skylake” W-2145, 3.60 GHz Intel® Xeon® W “Skylake” W-2145, 3.60 GHz
RAM128 GB128 GB128 GB64 GB128 GB128 GB128 GB128 GB128 GB128 GB128 GB128 GB
graphics cardNVIDIA Quadro P4000 - CUDANVIDIA Quadro P4000 - CUDAMD Radeon RX Vega 64AMD Radeon HD 5450AMD Radeon R9 200 seriesAMD Radeon Vega 64Radeon(TM) RX 480 Radeon(TM) RX 480 Radeon(TM) RX 480 NVIDIA Quadro P4000 - CUDANVIDIA Quadro P4000 - CUDANVIDIA GeForce RTX 2080Ti
Adobe Photoshop Express----yesyes-
arivis Vision 4D
(1 x floating license)
yes (1x float)yes (1x float)yes (1x float)yes (1x float)yes (1x float)yes (1x float)yes (1x float)yes (1x float)yes (1x float)yes (1x float)-
Autolt------v3.3.14.2----
C.A.R.E. / N2Voptionaloptionaloptionaloptionalyes
Doric studio--------yes
Fiji - ImageJ2yesyesyesyesyesyesyesyesyesyesyesyes
Huygens Professional (2x float)v 19.04v 19.04v 19.04v 19.04v 19.04v 19.04v 19.04v 19.04v 19.04v 19.10v 19.10
ilastik1.3.21.3.21.3.21.3.21.3.21.3.21.3.21.3.0: 1.3.21.3.21.3.31.3.3yes
Imaris (7x float)9.3.19.3.19.3.19.3.1.9.3.19.3.1.9.3.19.3.1.9.3.1.9.3.1 9.3.1
Imaris Stitcheryesyesyesyesyesyesyesyesyesyesyes
Imspector Pro (dongle needed)yes (dongle)yes (dongle)yes (dongle)yes (dongle)yes (dongle)---yes (dongle)yes (dongle)-
ISTabilizer-yesyesyesyesyesyesyesyesyes
JPK-SPM Data processing-v 6.1.102-v 6.1.102-----
MATLAB2018b2018b2018b2018b2017b2017b2015b, 2017a, 2017b2019b2019b-
Matlab Compiler runtime7.1; 8.4; 9.17.1; 8.4; 9.17.1; 8.4; 9.17.1; 8.4; 9.17.1; 8.4; 9.17.1; 8.4; 9.1, 9.37.1; 8.4; 9.17.1; 8.4; 9.17.1; 8.4; 9.17.1; 8.4; 9.1-
NIS-Elements ViewerElements 5.02.01
+ NIKON JOBS!
Viewer v 4.2
v4.2v4.2v4.2v4.2v4.2v4.2v4.2v4.2v4.2v4.2-
Wolfram Mathematicav 11.3v 11.3-------
Zen (full version)2.1 SP3
Tiling
2.3 SP1
+Airyscan processing
+Macro environment
2.1 SP3
Tiling
2.1 SP3
+Airyscan processing
+Macro environment
2.1 SP3-----
Zen core------yes---
Zen litev 2.5v 2.1v 2.5v 2.5v2.5v 2.3v 2.3v 2.5v 2.5-

Remote Desktop connection for CARE:

Machine learning routines such as CARE and Noise-2-Void are available on Workstation 10. Booking rights are granted upon a successfully completed training (request training here). The system can only be accessed after it is booked in PPMS booking (book here). To connect, please use your remote desktop client to connect to the computer wdbiif020, with your own user name (IST\username).

Booking guidelines:

  • You need to log in with your own credentials to Analysis Workstation-R1
  • You can not log on if you do not have a booking
  • You can not unlock the tracker pop-up screen when you do not have a booking
  • When a session reach the end of a booked session, the system will end the session and you will be automatically log off at the end of a session (after warnings): Please be aware that there is a risk of potential data loss in case you did not book long enough! To prevent data-loss: make sure to book sufficient time for your analysis to complete and cancel the remaining time of your booking in case your jobs finish early.

Delayed shut-down or log-off:

To delay shutdown (log-off): Open the Run window by pressing Windows+R . In the run command box type the command

  •  ”shutdown -s -t 3600 /f” Now click OK. Note that if its not working you can also use shutdown /s /t 3600 .
  •  ”shutdown -L -t 3600 /f” this will log of the computer (not yet tested)

-> 3600 in seconds means it will shut down itself after 3600 seconds = 1 hour,..