Bioimaging training resources

The Bioimaging Facility would like to help you to spend your forced off-campus time efficiently. To that extent we would like to share the following resources with you (this list will be continuously updated):

→ The Bioimaging Facility would like to acknowledge all of the authors of the cited and linked resources for making their resources available for the community!


FEATURED CONTENT: 

[30-03-2020]NEUBIAS Academy @Home: online events targeting Bioimage Analysis Technology

  • 30 April: Advanced Image Processing with MorphoLibJ, by David Legland
  • 5 May: ilastik beyond pixel classification, by Anna Kreshuk and Dominik Kutra
  • 6 May: GPU-Accelerated Image Processing with CLIJ2, by Robert Haas
  • 7 May: Interactive Bioimage Analysis with Python and Jupyter, by Guillaume Witz

MICROSCOPY


MICROSCOPY LEARNING PLATFORMS – the following websites provide learning platforms with background information about different microscopy basics and technologies


MICROSCOPY – FREE ONLINE BOOKS


MICROSCOPY – ONLINE SEMINARS


MICROSCOPY please follow the links to find more information about the listed topics


MICROSCOPY MAINTENANCE & CLEANING OPTICS

COMPANY RECOMMENDED MICROSCOPE SANITIZING ROUTINES


IMAGING TECHNOLOGIES background information and application noted


QUANTITATIVE BIOIMAGING APPLICATIONS background information and application notes

  • FRET
  • RICS

FLUOROPHORE INFORMATION:


MOBILE APPLICATIONS:

  • [19-03-2020]: Fluorescence SpectraViewer App (Invitrogen): Apple
  • [19-03-2020]:Fluorescence Spectra Analyzer ( BioLegend Inc.): Android
  • [19-03-2020]: Huygens Nyquist calculator App (SVI)  Apple | Android
  • [19-03-2020]: Koehler Tutor App: Koehler Illumination ((Andrew Barlow): Apple | Android
  • [19-03-2020]: Resolution App: Objective Lens Information (Andrew Barlow): Apple | Android

IMAGE ANALYSIS


IMAGE ANALYSIS – ONLINE SEMINARS


ONLINE IMAGE ANALYSIS COURSES:


FREE IMAGE ANALYSIS TOOLS: several companies provide tools fro free, so you can be productive


HARDWARE CONTROL:


  • [20-03-2020]: Labview National Instruments training courses are  available for free until at least April 30 – webpage
  • [20-03-2020]: μManager Open Source Microscopy Software – webpage & screencasts
  • [21-03-2020]: Metamoph website | knowledge base

BIF RESOURCES:


  • [15-03-2020]: Image analysis software sub-page, lists the software the we have on campus
  • [15-03-2020]: BIF deconvolution resource sub-page, lists several options for digital image restoration
  • [15-03-2020]: BIF machine learning application sub-page, resources and applications notes
  • [25-03-2020]: BIF tissue clearing assays sub-page, resources and applications notes
  • [15-03-2020]: BIF microscopy course sub-page, our slides from the course from autumn 2019
  • [13-06-2019]: Brief intro to imageJ macro: presentation